Seminari Gruppo Fisica della Materia

Unraveling single-stranded DNA secondary structure using single-molecule experiments

by Dr Xavier Viader-Godoy (Università degli Studi di Modena e Reggio Emilia)

Europe/Rome
1/1-2 - Aula "C. Voci" (Dipartimento di Fisica e Astronomia - Edificio Marzolo)

1/1-2 - Aula "C. Voci"

Dipartimento di Fisica e Astronomia - Edificio Marzolo

32
Description

The folding of biological macromolecules is a fundamental process of which we lack complete comprehension. Force-spectroscopy techniques have been used to extract biological information from the folding/unfolding processes of mechanically denaturized proteins and nucleic acids. Here, I will present the experimental results obtained from pulling individual molecules of single-stranded DNA using Optical Tweezers. These results have been obtained
by varying their sequences, lengths and salts concentrations, showing a vast and complex array of transitions, such as secondary structure formation and stacking, which can be measured with nanometric precision. I will also show how Ising-like models can reproduce the obtained force-extension curves. These allow us to derive quantitative information of the energies of the transitions between different states, predicting the structures involved in the
absence of an external force applied and giving insight into their underlying structure. 

Organised by

Annamaria Zaltron